Katharina Gaus Light Microscopy Facility (KGLMF)

Personalise
Lightsheet imaging technique by KGLMF
Personalise

Who we are

The Katharina Gaus Light Microscopy Facility, is a dedicated team of scientists committed to advancing research through comprehensive support and training in microscopy. Our mission is to empower researchers with both fundamental and cutting-edge microscopy techniques to push the boundaries of scientific discovery.

We understand that high-quality imaging is crucial for scientific research, and provide support from initial consultation through to specimen preparation services, training in light microscopy, and image analysis and interpretation. Our state-of-the-art facility is equipped with the latest technology to ensure the best possible results for your research.

Funding partners:

Capabilities

Science molecule icon
Transmitted & fluorescence light microscopy
Utilise advanced light microscopy to visualise samples with transmitted light or fluorescence labelling, enabling detailed study of cellular and molecular structures.
Science molecule strucutre icon
Histology services
Access comprehensive tissue preparation services, including fixation, embedding, sectioning, and staining, to prepare high-quality samples for imaging and analysis.
3d drawing 3 icon
Optical sectioning
Create sharp 3D reconstructions of thick specimens by capturing optical sections using methods like confocal, multiphoton, and structured illumination microscopy.
Science perspective icon
Spatial transcriptomics & proteomics
Map gene and protein expression in tissues with spatially resolved techniques, linking molecular information to cellular architecture for comprehensive insights into biology and pathology.
Science atom positive negative icon
Atomic Force Microscopy (AFM)
Investigate surface topography, mechanical properties, and nanostructures with atomic force microscopy, offering nanometer-scale resolution and material characterization.
Science cells icon
2D & 3D tissue culture
Develop and study complex biological models with expertise in 2D and 3D tissue cultures, including organoids and spheroids, for imaging-based biomedical research.
Laboratory sample icon
Live cell imaging
Observe dynamic processes in real time with specialized imaging systems designed for live cells under controlled environmental conditions.
Super-resolution light microscopy
Push beyond the diffraction limit to resolve nanoscale structures with advanced super-resolution techniques, including STED, STORM, SIM, and Airy Scan.
Image analysis
Leverage advanced software tools for quantitative analysis, 3D reconstructions, segmentation, and visualization to turn complex imaging data into actionable insights.

Techniques

Instruments

  • The Leica Stellaris 8 is a state-of-the-art confocal microscope designed for advanced imaging applications. Equipped with a tunable white light laser, it provides flexible excitation across a wide range of fluorophores, enabling precise spectral imaging. The system also features Fluorescence Lifetime Imaging (FLIM) capabilities, offering insights into molecular interactions and environmental changes at the nanoscale. With its high sensitivity and resolution, the Stellaris 8 is ideal for multidimensional imaging of complex samples.

  • The Zeiss Lightsheet 7 is a cutting-edge light sheet microscope optimized for imaging large, delicate, and cleared samples with minimal photodamage. Its unique optical design allows fast, high-resolution, and 3D imaging across a wide range of specimen types, from organoids and spheroids to whole embryos and tissues. The system supports advanced sample clearing techniques and accommodates specimens in a variety of refractive indices, making it ideal for long-term, multidimensional imaging in developmental biology and pathology research.

  • The Luxendo InviSPIM Lattice Pro is a versatile multimodal light sheet microscope offering Gaussian, Bessel, and lattice light sheet illumination modes for tailored imaging across diverse sample types. Its advanced design enables gentle, high-speed, and high-resolution 3D imaging, minimizing phototoxicity while capturing fine structural and dynamic details. With the integration of a PCO FLIM camera, the system provides fluorescence lifetime imaging (FLIM) capabilities, allowing researchers to study molecular interactions and environmental factors such as pH and ion concentrations. This flexibility makes it ideal for imaging organoids, spheroids, embryos, and other complex live or fixed specimens, supporting cutting-edge biological and biomedical research.

  • The MERSCOPE from Vizgen is a high-resolution in situ platform powered by MERFISH technology that maps and quantifies RNA species in tissues at single-cell resolution, enabling detailed spatial genomics analysis. It supports flexible experimental setups with customizable gene panels, enhancing cost efficiency and research productivity.

  • The Leica DIVE system is an advanced multiphoton microscope designed for deep tissue imaging with exceptional flexibility and sensitivity. Featuring two tunable multiphoton lasers, it allows simultaneous excitation of multiple fluorophores for efficient, high-resolution imaging. The system is equipped with spectral non-descanned detectors (NDDs), enabling high signal-to-noise detection of fluorescence from deep within tissues. Additionally, its Fluorescence Lifetime Imaging (FLIM) capability provides critical insights into molecular interactions and environmental changes. With its Deep In Vivo Explorer (DIVE) technology, the system supports imaging depths exceeding 1 mm, making it ideal for live-cell and intravital imaging in neuroscience, developmental biology, and disease research.

  • The Nikon Ti2 microscope, paired with the Yokogawa W1 spinning disk confocal unit, delivers high-speed, high-resolution imaging for dynamic and live-cell studies. The spinning disk technology minimizes phototoxicity and bleaching, making it ideal for long-term imaging of sensitive samples. Equipped with a dual-camera setup, the system enables simultaneous multi-channel acquisition, significantly enhancing temporal resolution and enabling advanced colocalization studies. This configuration is perfect for applications requiring rapid, multidimensional imaging, such as cellular dynamics, intracellular trafficking, and live-tissue research.

Workshops & events

KGLMF staff working in the lab
KGLMF staff working in the lab
<p>Introduction to image processing &amp; analysis <sub>using</sub> FIJI</p>

Master the basics of image processing and analysis through our workshop series. Utilizing ImageJ/FIJl, these sessions will guide you in preparing your data for presentation and publication, alongside offering an initial insight into image analysis.

yellow morven brown unsw brand shape
Colocalisation analysis
Colocalisation analysis involves examining and understanding the spatial relationship between one channel and another. If you're capturing images across multiple channels and seek to quantify their relationship, this workshop is designed specifically for you.
yellow morven brown unsw brand shape
Image processing automation with FIJI
This workshop will concentrate on automating tasks in FIJI. If you know what you want to achieve but find yourself weary from all the clicking, we'll guide you through the process of recording and editing macros, as well as crafting scripts using Groovy.
yellow morven brown unsw brand shape
Machine learning for segmentation
Segmentation, the task of identifying objects within an image, stands as one of the more complex challenges in image analysis. The advent of machine learning has brought significant advancements in this domain. However, grasping the practical aspects of applying machine learning to segmentation can necessitate some guidance.

Our people

Headshot of Alex Macmillan
Head of KGLMF

Phone: 02 9065 1672
Emailalex.macmillan@unsw.edu.au

 

Dr Michael Carnell staff headshot for KGLMF
Senior Lecturer

Phone: 02 9065 1764
Emailm.carnell@unsw.edu.au

opens in a new window
 Celine Heu staff headshot for KGLMF
Lecturer

Phone: 02 9065 2034
Emailc.heu@unsw.edu.au

 

opens in a new window

Fees

Time clock file cash icon

Hourly rates

Charges are accumulated at an hourly rate

Calendar cash 1 icon

Subscription models

Flat free subscriptions available for heavy usage

Room service plates icon

Fee for service

Preparation and/or imaging by BMIF

  •  Below are the lists of charges for various services. All charges are ex GST

      Includes UNSW/Partner  External Period
    Hourly Spectroscopy Fluorometer and Lifetime Spectroscopy$20.00/h $20/hr $36/hr Per Hour
    Hourly Microscopy Microscopes and Image Analysis platforms $50/hr $90/hr Per Hour
    4 Month Subscription Use of all equipment $1,100 N/A 4-month period within the calendar year
    (1st Jan - 31st Dec)
    This rate cannot be renewed within the same calendar year

    Student Annual Subscription 

    (Honours Students only)

    Use of all equipment $1,000 N/A 1st Jan 2025 - 31st Dec 2025
    Annual Subscription 1 Use of all equipment excluding lightsheet 
    AND intravital microscopes
    $1,750 N/A 1st Jan 2025 - 31st Dec 2025
    Annual Subscription 2 Use of all equipment including either lightsheet OR intravital microscopes $2,200 N/A 1st Jan 2025 - 31st Dec 2025
    Annual Subscription 3 Use on all equipment including both lightsheet AND intravital microscopes $2,500 N/A 1st Jan 2025 - 31st Dec 2025
    Fee For Service (FFS) Imaging services performed by BMIF staff TBD TBD Contact kglmf@unsw.edu.au

     

    •  
      Hourly Spectroscopy
      Includes
      Fluorometer and Lifetime Spectroscopy$20.00/h
      UNSW/Partner 
      $20/hr
      External
      $36/hr
      Period
      Per Hour
    •  
      Hourly Microscopy
      Includes
      Microscopes and Image Analysis platforms
      UNSW/Partner 
      $50/hr
      External
      $90/hr
      Period
      Per Hour
    •  
      4 Month Subscription
      Includes
      Use of all equipment
      UNSW/Partner 
      $1,100
      External
      N/A
      Period
      4-month period within the calendar year
      (1st Jan - 31st Dec)
      This rate cannot be renewed within the same calendar year
    •  

      Student Annual Subscription 

      (Honours Students only)

      Includes
      Use of all equipment
      UNSW/Partner 
      $1,000
      External
      N/A
      Period
      1st Jan 2025 - 31st Dec 2025
    •  
      Annual Subscription 1
      Includes
      Use of all equipment excluding lightsheet 
      AND intravital microscopes
      UNSW/Partner 
      $1,750
      External
      N/A
      Period
      1st Jan 2025 - 31st Dec 2025
    •  
      Annual Subscription 2
      Includes
      Use of all equipment including either lightsheet OR intravital microscopes
      UNSW/Partner 
      $2,200
      External
      N/A
      Period
      1st Jan 2025 - 31st Dec 2025
    •  
      Annual Subscription 3
      Includes
      Use on all equipment including both lightsheet AND intravital microscopes
      UNSW/Partner 
      $2,500
      External
      N/A
      Period
      1st Jan 2025 - 31st Dec 2025
    •  
      Fee For Service (FFS)
      Includes
      Imaging services performed by BMIF staff
      UNSW/Partner 
      TBD
      External
      TBD
      Period
      Contact kglmf@unsw.edu.au
  •  Below are the lists of charges for various services. All charges are ex GST

    • DIY – Do It Yourself (self service)

    BSP Grouping

    Protocol

    Price (Ex. GST)

    UNSW/Partner

    Price (Ex GST)

    External

    Job

    Embedding

    Paraffin Embedding $5 $9 Per Block 
    Paraffin Slide Sealing $1 $2 Per Block 
    Sectioning Paraffin Sectioning $5 $9 For first slide from each block
    $2 $4 For subsequent slides from same block
    Cryosectioning $5 $9 For first slide from each block
    $2 $4 For subsequent slides from same block
    Microtome *DIY $20 $36 Per Hour (1 hour training required for new users)
    Vibratome *DIY $20 $36 Per Hour (1 hour training required for new users)
    Cryomicrotome *DIY $25 $45 Per Hour (1 hour training required for new users)
    Microtomy Subscription *DIY (Yearly) $400 N/A

    For usage > 20 hours within the calendar year

    *(1st Jan - 31st Dec)

    Staining H&E Staining $5 $9 For first slide of each stain
    $2 $4 For subsequent slides of same stain
    Immunostaining -
    Chromogenic DAB
    $25 $45 Per one antibody on slide (does not include sectioning; primary antibodies to be provided by user)
    Immunostaining -
    Fluorescence
    $25 $45 Per one antibody on slide (does not include sectioning; primary and secondary antibodies to be provided by user) -  additional primary antibody $20/$35 each
    Specialised Stains TBD TBD

    Pricing depends on protocol

  •  Below are the lists of charges for various services. All charges are ex GST

    • DIY – Do It Yourself (self service)
    Slide Scanning service on Olympus VS200  UNSW/Partner External Job
    Bright Field, Phase contrast, Polarized (H&E, IHC, special stains) $11 $20 Per Slide, 1 imaging mode
    Slide scanning additional scan (Bright Field, Polarized, Darkfield, Phase contrast) $6 $10 Per Slide
    Fluorescence - basic $16 $29 Per Slide - <= 2 channels, <= 1 hour scan
    Fluorescence - complex $22 $40 Per Slide:  3 or more channels, > 1 hour scan
    Slide scanning *DIY (Hourly) $50 $90 Per Hour
    Slide scanning DIY^ (Yearly) $1,750 NA For usage ≥ 30 hours within the calendar year (1st Jan – 31st Dec) UNSW and Partner – access to KGLMF subscription External User – BF slide scanning only Does not include slide cleaning

    Slide cleaning

    (Additional surcharge per slide if slides require cleaning before scanning)
    Includes cleaning of dust/oil and/or trimming of excess mounting media from slide edges to prevent slides jamming in the equipment

    $5 $5  

     

    • Slide Scanning service on Olympus VS200
      Bright Field, Phase contrast, Polarized (H&E, IHC, special stains)
       UNSW/Partner
      $11
      External
      $20
      Job
      Per Slide, 1 imaging mode
    • Slide Scanning service on Olympus VS200
      Slide scanning additional scan (Bright Field, Polarized, Darkfield, Phase contrast)
       UNSW/Partner
      $6
      External
      $10
      Job
      Per Slide
    • Slide Scanning service on Olympus VS200
      Fluorescence - basic
       UNSW/Partner
      $16
      External
      $29
      Job
      Per Slide - <= 2 channels, <= 1 hour scan
    • Slide Scanning service on Olympus VS200
      Fluorescence - complex
       UNSW/Partner
      $22
      External
      $40
      Job
      Per Slide:  3 or more channels, > 1 hour scan
    • Slide Scanning service on Olympus VS200
      Slide scanning *DIY (Hourly)
       UNSW/Partner
      $50
      External
      $90
      Job
      Per Hour
    • Slide Scanning service on Olympus VS200
      Slide scanning DIY^ (Yearly)
       UNSW/Partner
      $1,750
      External
      NA
      Job
      For usage ≥ 30 hours within the calendar year (1st Jan – 31st Dec) UNSW and Partner – access to KGLMF subscription External User – BF slide scanning only Does not include slide cleaning
    • Slide Scanning service on Olympus VS200

      Slide cleaning

      (Additional surcharge per slide if slides require cleaning before scanning)
      Includes cleaning of dust/oil and/or trimming of excess mounting media from slide edges to prevent slides jamming in the equipment

       UNSW/Partner
      $5
      External
      $5
      Job
       
  •  Below are the lists of charges for various services. All charges are ex GST

    • Includes unlimited use of EM ICE, AFS2 and Biowave. Does not include consumables (i.e. grids, planchettes, sapphire disks)
    Protocol UNSW/Partner External Job
    Electron Microscopy Processing
    (fixation, EM post fixation, embedding)
    $5 $9 Per Sample
    Biowave use $15 $27 Per Hour
    35mm GRID dish $10 $18 Per Sample
    EM Chemical Processing $5 $9 Per Sample
    Apex DAB Reaction $5 $9 Per Tablet (4 samples)
    Leica ICE 6mm Planchettes $20 $36 Per Sample
    Leica ICE 6mm Sapphires $60 $108 Per Sample
    Leica ICE Run Rate $50 $90 Per Hour
    Leica AFS2 Run Rate $50 $90 Per Day (24 hours)
    Cryo Preparation Subscription (Yearly)* $1,500 N/A 1st Jan 2025 - 31st Dec 2025
    • Protocol
      Electron Microscopy Processing
      (fixation, EM post fixation, embedding)
      UNSW/Partner
      $5
      External
      $9
      Job
      Per Sample
    • Protocol
      Biowave use
      UNSW/Partner
      $15
      External
      $27
      Job
      Per Hour
    • Protocol
      35mm GRID dish
      UNSW/Partner
      $10
      External
      $18
      Job
      Per Sample
    • Protocol
      EM Chemical Processing
      UNSW/Partner
      $5
      External
      $9
      Job
      Per Sample
    • Protocol
      Apex DAB Reaction
      UNSW/Partner
      $5
      External
      $9
      Job
      Per Tablet (4 samples)
    • Protocol
      Leica ICE 6mm Planchettes
      UNSW/Partner
      $20
      External
      $36
      Job
      Per Sample
    • Leica ICE 6mm Sapphires
      Leica ICE Run Rate
      $60
      $50
      $108
      $90
      Per Sample
      Per Hour
    • Leica ICE 6mm Sapphires
      Leica AFS2 Run Rate
      $60
      $50
      $108
      $90
      Per Sample
      Per Day (24 hours)
    • Leica ICE 6mm Sapphires
      Cryo Preparation Subscription (Yearly)*
      $60
      $1,500
      $108
      N/A
      Per Sample
      1st Jan 2025 - 31st Dec 2025
    • Immunostaining can be added with no extra charge, but you need to provide all optimized protocols and staining reagents
    Type Protocol UNSW/Partner External Job
    Sample Clearing Cubic reagent 1/2 (RI: 1.48) $50 $90 Per Slide
    CUBIC Reagent L/R (RI: 1.51)
    CLARITY (RI: 1.45)
    PEGASOS (RI: 1.54)
    Ethyl Cinnamate (RI: 1.56)
  • Method UNSW/Partner Australian Universities
    BOND single immunohistochemistry DAB $25 $45
    BOND immunohistochemistry positions DAB $35 $63
    2 OPAL MONOPLEX/LIBRARY (DAPI + 1 OPAL) $55 $99
    3 OPAL MULTIPLEX (DAPI + 2 OPAL) $60 $108
    4 OPAL MULTIPLEX (DAPI + 3 OPAL) $70 $126
    5 OPAL MULTIPLEX (DAPI + 4 OPAL) $84 $151.20 
    6 OPAL MULTIPLEX (DAPI + 5 OPAL) $98 $176.40 
    7 OPAL MULTIPLEX (DAPI + 6 OPAL) $112 $201.60 
    8 OPAL MULTIPLEX (DAPI + 7 OPAL) $126 $226.80
    9 OPAL MULTIPLEX (DAPI + 8 OPAL) $140 $252
     Multiplexing Project Fee $2,500 $4,500

     

    • Method
      BOND single immunohistochemistry DAB
      UNSW/Partner
      $25
      Australian Universities
      $45
    • Method
      BOND immunohistochemistry positions DAB
      UNSW/Partner
      $35
      Australian Universities
      $63
    • Method
      2 OPAL MONOPLEX/LIBRARY (DAPI + 1 OPAL)
      UNSW/Partner
      $55
      Australian Universities
      $99
    • Method
      3 OPAL MULTIPLEX (DAPI + 2 OPAL)
      UNSW/Partner
      $60
      Australian Universities
      $108
    • Method
      4 OPAL MULTIPLEX (DAPI + 3 OPAL)
      UNSW/Partner
      $70
      Australian Universities
      $126
    • Method
      5 OPAL MULTIPLEX (DAPI + 4 OPAL)
      UNSW/Partner
      $84
      Australian Universities
      $151.20 
    • Method
      6 OPAL MULTIPLEX (DAPI + 5 OPAL)
      UNSW/Partner
      $98
      Australian Universities
      $176.40 
    • Method
      7 OPAL MULTIPLEX (DAPI + 6 OPAL)
      UNSW/Partner
      $112
      Australian Universities
      $201.60 
    • Method
      8 OPAL MULTIPLEX (DAPI + 7 OPAL)
      UNSW/Partner
      $126
      Australian Universities
      $226.80
    • Method
      9 OPAL MULTIPLEX (DAPI + 8 OPAL)
      UNSW/Partner
      $140
      Australian Universities
      $252
    • Method
       Multiplexing Project Fee
      UNSW/Partner
      $2,500
      Australian Universities
      $4,500
Subscriptions
  • Only available within UNSW and partner organisations
  • Are per individual and are non-transferable to other people
  • Finish on the 31st December 2025
  • Allow uncapped usage, however this does depend on instrument and staff availability. Good planning is necessary in busy periods late in the year.

Unsure if you should pay hourly or take out a subscription?

You can start on an hourly rate, and it will automatically convert to a subscription (if eligible) once a subscription is cheaper than your hourly accumulation.

How to access

Contact us at kglmf@unsw.edu.au with your inquiry and we will arrange a meeting to discuss your requirements in detail. If you wish to access our instruments, please complete the ACLS registration process to begin onboarding.

  • Start by creating a user profile in our booking system - ACLS.

  • Once you have completed the registration, you‘ll get an email detailing the steps for onboarding.

    This email will include a link to a form where you can describe your project. The details you sent me will help us put together a highly skilled team ready to meet with you and address your requirements.

  • During this meeting will explain how you can gain access to our lab space and what training you can anticipate.

    Additionally, we will talk about your research project to make sure you match with the most suitable instrument for your research question.

  • To access the lot you must finish an online lab induction and receive a training from KGLMF staff on how to use the instruments. Our training is thorough and designed to accommodate even individuals who have no prior experience with microscopes. 

Contact us

Katharina Gaus Light Microscopy Facility

Room LG12, Lower Ground
Lowy Cancer Research Centre (C25)
UNSW Sydney

Phone : 02 9065 5306
Email kglmf@unsw.edu.au

We like to hear from you. If you have questions, requests or ideas for collaboration, please complete the contact form and we will be in touch within five business days.

Get in touch about your project

We offer a range of services that can be tailored to your needs. Please send us an enquiry to get started.

Complementary services